miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002371
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIRf1541
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGGTGTTCGACGGAATGCCT

miRNA*
TGTTGTCTTTCAACGCCTTGC

mismatches: 3
bulges: 2

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pre-miRNA
TAAACCTCTACGGACGAGCTGGTATGTTCGAGAATGCACAGAAGGTGTTCGACGGAATGCCTGAGAGAAACTGCAAGAGATCAGTGTTGTCTTTCAACGC
CTTGC
TGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTT


dot-bracket secondary structure
..((((....(((((....(((...(((((...((((((((((((((((.((.(((..((((((................)))).))..))).)))))))
))).)
))..)))))...))))).)))....)))))....))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9LK57|PP226_ARATH: 1e-18

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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